I'm Sriram P Chockalingam, a researcher in Computational Biology, specifically interested in the use of parallel computing in high-throughput sequencing applications and systems biology


I am currently working as a Research Scientist at the Institute for Data Engineering and Science in Georiga Intitute of Technology at Atlanta, GA, USA. My research interests include Parallel Algorithms, Approximate Sequence Matching, and Reverse-engineering Gene networks at genome-scale. I completed by Ph.D in Computer Science and Engineering from IIT Bombay. Formerly, I was a software engineer and a consultant in an IT company.

Selected Publications

  1. Sriram P. Chockalingam, Sharma V. Thankachan, and Srinivas Aluru. A parallel algorithm for finding all pairs k-mismatch maximal common substrings. In Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC), p. 67., 2016.
  2. Sriram P Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, and Srinivas Aluru. Reverse Engineering Gene Networks: A Comparative Study at Genome-scale. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB), pp. 480-490, 2017.
  3. Sharma V Thankachan, Sriram P Chockalingam, Yongchao Liu, Ambujam Krishnan, and Srinivas Aluru. A greedy alignment-free distance estimator for phylogenetic inference. BMC Bioinformatics, Vol. 18, No. 8 (107): p. 238.

For a complete list with co-authors and citations, please refer to my Google Scholar profile.


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